If 
                  you don't have a wiring diagram, download a copy from Mark's 
                  site. Wiring Diagram. 
                  If you print the diagram (maybe blow up the section you need), 
                  you will be able to use a marker to trace over the wires as 
                  you check to avoid being confused.
                Prepare 
                  to be annoyed, frustrated and confused but not necessarily in 
                  that order. Electrical is the weakest area in most technicians 
                  practice but shouldn't be because it is simply a matter of deduction 
                  (or maybe that should be induction! VBG) Time, experience and 
                  practice will see your skills improve. There is nothing magic 
                  about wiring!
                The 
                  relay circuit has two main parts, the part that controls the 
                  relay and the part that is controlled by the relay. A relay 
                  is simply a switch that is operated electrically. Allowing power 
                  to flow to the electro-magnet winding will create a magnetic 
                  field that attracts the contact arm. This is the "click" 
                  you hear when a relay operates- the relay contacts snapping 
                  together. When operating a switch, you perform the action that 
                  is done by the control circuit in a relay.
                A 
                  typical Bosch type relay has 5 connections as follows: 
                1 
                  & 2- Winding (control circuit) has two connections, one 
                  for each "end" of the winding.
                3- 
                  Contact arm (common in the switched or controlled circuit.)
                4- 
                  Normally open contact. 
                5- 
                  Normally closed contact. 
                Some 
                  relays share two connections to one connector as in a ground 
                  for the control winding connected along with the normally closed 
                  contact.
                The 
                  relay's controlled or switched circuit has the movable contact 
                  arm that is held away from the normally open contact by spring 
                  pressure. This "normally open" contact is simply that, 
                  normally open, not connected. When the relay has power applied 
                  to the magnet, "click" the contact arm's contact snaps 
                  against the normally open contact and power can flow through 
                  the circuit just like would happen if you touched two wires 
                  together or flipped a switch. 
                Many 
                  relays have a normally closed contact also as I said earlier 
                  and the contact arm is in contact with the normally closed contact 
                  unless power is applied to the relay's winding. This normally 
                  closed circuit is useful to have something turned on when power 
                  isn't flowing in a circuit such as operating low beams then 
                  using a switch to close the relay to operate high beam. If the 
                  switch fails the circuit will fail with the low beams on so 
                  some lights will be always available.
                Consulting 
                  the wiring diagram will allow you to determine the wires that 
                  form the control and controlled (switched) circuits to the relay. 
                  Once you know which wire is which, you can use a test light 
                  or voltmeter to see whether power is available to the switched 
                  circuit (relay connector with one lead of your test light and 
                  ground with the other). You can easily make a test light for 
                  doing this with a small light bulb and socket. A pair of spade 
                  lug connectors on the ends of the bulb socket wires will allow 
                  you to plug into the relay plug connections for hands free. 
                  
                You 
                  should have power to one of the control circuit connections 
                  (per the wiring diagram) and the other connection should be 
                  connected to the bike's frame (ground circuit) when the radiator 
                  is hot enough to close the temperature switch. The ground circuit 
                  connects back to the battery negative to complete the path for 
                  power to the battery.
                My 
                  bet is that you have either, a broken wire making and breaking 
                  connection inside the insulation or a loose ground connection.
                To 
                  test for power to the control circuit connection on the relay 
                  connector, remember that this circuit is hot all the time so 
                  you shouldn't have to have the key on. In order to check the 
                  ground connection on the relay plug, you will have to remove 
                  the plug from the temperature switch in the bottom of the radiator 
                  and connect the wire to a good ground ( a bare metal part such 
                  as a bolt). 
                If 
                  you plug a test light into the two control circuit connections 
                  in the relay plug, the light should come on whenever the temperature 
                  switch wire is touched to ground and go off when the switch 
                  wire is removed from ground.
                To 
                  test the controlled (switched) half of the circuit, the first 
                  test might be to connect a wire between the two connections 
                  for this circuit on the relay plug (per the wiring diagram). 
                  The fan should operate whenever these two connectors are bridged 
                  with a wire.
                If 
                  the fan operates with the controlled (switched) connectors bridged, 
                  wiggle, prod and push all the wires you can reach to see if 
                  the fan operates or stops (depending). If it does you will have 
                  to fiddle with the wiring to try to localize the intermittent 
                  connection. If it doesn't operate, try wiggling the wires to 
                  see if it operates as you will be trying to make the bad connection 
                  open and close the circuit in order to figure out where the 
                  problem lies in the harness.
                If 
                  this does not show up the fault, try the same thing by connecting 
                  your test light across the control circuit connections in the 
                  relay plug, then push prod and wiggle.
                Another 
                  option, if you can't locate the broken wire or bad connection 
                  is to determine whether the power wire or fan wire (load wire) 
                  is the one that is at fault. This will be useful if the wires 
                  are run together where the fault lies since wiggling the wires 
                  will not allow you to blame one wire in particular. 
                In 
                  order to see which wire is at fault, first connect your test 
                  light from the powered connector (the one which comes from the 
                  battery positive through the fuse), to a good ground and do 
                  the wiggle bit. If the light will come on or off then this wire 
                  is at fault (or you haven't succeeded in operating the bad connection). 
                  
                If 
                  this doesn't show the fault, connect your test light from the 
                  battery positive to the switched contact of the relay connector 
                  plug (the one to the fan). The fan will not run because the 
                  test light has too much resistance to allow enough current flow 
                  to run the fan. On the other hand, the fan will allow ample 
                  current flow for the test light to operate so it should light. 
                  Now wiggle the wires to see if the test light flickers, goes 
                  off or comes on to locate the fault. 
                Similarly, 
                  if the fault could not be localized to one wire in particular 
                  on the control side of the circuit, you can test the wires individually 
                  by connecting your test light from the battery positive to the 
                  relay plug connection which goes to the temperature switch, 
                  ground the switch connector and proceed to wiggle, prod and 
                  push. The other wire can be tested by connecting your test light 
                  between the control circuit's powered wire and ground, wiggle.
                If 
                  you can't locate the fault by this method then you may wish 
                  to simply rewire the fan circuit.